Full-Stack Developer / Scientific Software Engineer Position

Jobs in Structural Biology and Related Fields
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Full-Stack Developer / Scientific Software Engineer Position
Biocomputing Unit, Spain
Biocomputing Unit and the Instruct Image Processing Center is seeking for a
Full-Stack Developer / Scientific Software Engineer.
About Scipion:
Scipion is an open-source, workflow-oriented software framework used primarily in Cryo-Electron Microscopy (cryoEM). It integrates various scientific software packages into a unified interface, allowing researchers to execute, track, and share complex image-processing pipelines. Its goal is to ensure reproducibility and provide a seamless experience for processing high-resolution biological data.
About ScipionWeb:
ScipionWeb is the modern web-based evolution of this framework. It provides a platform to manage scientific projects and workflows: from project creation and protocol execution to high-level visualization and productivity tools.
Stack: React + TypeScript (Frontend) and FastAPI + Python (Backend).
Role and responsibilities
In the short term, you will:
Take responsibility for full-stack development of the ScipionWeb interface (UI + API + Integration).
Learn the backend logic, the Scipion core architecture, and specific scientific domains like SPA (Single Particle Analysis) and Tomography.
In the long term, you will:
Focus on the Scipion Core and expansion into new scientific domains.
Maintain and update the ScipionWeb ecosystem to ensure long-term stability.
Requirements
Academic & Language
Degree: BSc/MSc in Physics, Mathematics, or Software Engineering.
English: B2 level or equivalent (ability to work in an international environment).
Technical Skills
Python: 2+ years of experience with Core Python (Standard Library).
Linux: Solid basic knowledge (Ubuntu is our preferred distribution).
Version Control: GitHub (PRs, collaborative workflows).
DevOps/Distribution: Experience with software distribution (PyPI, Conda) and CI/CD (GitHub Actions).
The Tools We Use:
Frontend: React Router, React Query, MUI, ReactFlow (for diagrams).
Backend: FastAPI, Pydantic, service-oriented layers.
Integration: Async workflows (jobs/queues), schema-based forms, and data visualization.
Desirable skills and knowledge:
Knowledge of Image Processing or cryoEM.
Experience with 3D visualization (three/react-three-fiber or vtk.Js).
Experience with Docker and Celery.
A strong eye for API design and complex UI (editors, dashboards, large-scale data).
What We Value
We are looking for someone with a scientific mindset—someone who is not only a great coder but is also curious about how pipelines and HPC (High-Performance Computing) environments work. xhfqzwm You should enjoy solving complex logic puzzles and building tools that help scientists discover the building blocks of life.
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